Refereed Journals: Accepted as of November 5th, 2015 (h-factor of 5 from Web of Science/Scopus, 7 Google Scholar).
1. Allan R., Endfield G., Damodaran V., Adamson G., Hannaford M., Carroll F., Macdonald N., Groom N., Jones J., Williamson F., Hendy E., Holper P., Arroyo-Mora J.P., Hughes L., Bickers R., Bliuc A. Towards integrated historical climate research: the example of ACRE (Atmospheric Circulation Reconstructions over the Earth). WIREs Climate Change. 2015.
2. Kalacska, M., Arroyo-Mora J.P., Soffer R., Leblanc G. Quality control assessment of the Mission Airborne Carbon 2013 (MAC-13) hyperspectral imagery from Costa Rica. Canadian Journal of Remote Sensing. 2015.
3. Fagan, M.E., DeFries, R.S., Sesnie, S.E., Arroyo-Mora, J.P., and R.L. Chazdon. Targeted reforestation could combat declines in connectivity for understory birds in a tropical habitat corridor. Ecological Applications. 2015.
4. Arroyo-Mora, J.P., Svob, S., Kalacska, M., Chazdon, R.L. Historical patterns of natural forest management in Costa Rica: the good, the bad and the ugly. Forests. 2014. 5, 1777-1797.
5. Svob S., Arroyo-Mora J.P, Kalacska M. 2014. Development of a forestry geodatabase and tree taxonomic analysis for natural forest management plans in Costa Rica. Forest Ecology and Management. 2014. 327, 240–250.
6. Svob S, Arroyo-Mora J.P, Kalacska M. An assessment of wood density and aboveground biomass variability using pre-felling inventory data in Costa Rica. Carbon Balance and Management. 2014. 9:9.
7. Kalacska M, Arroyo-Mora, J.P, de Gea, J, Snirer E, Herzog C, Moore, T. Videographic Analysis of Eriophorum vaginatum Spatial Coverage in an Ombotrophic Bog. Remote Sensing. 2013. 5(12), 6501-6512.
8. Fagan, M. E., DeFries, R. S., Sesnie, S. E., Arroyo, J. P., Walker, W., Soto, C., Sanchun, A. Land cover dynamics following a deforestation ban in northern Costa Rica. Environmental Research Letters. 2013. 8(3): 034017.
9. Chazdon, R. L., A. Chao, R. K. Colwell, S.Y. Lin, N. Norden, S. G. Letcher, D. B. Clark, B. Finegan, and Arroyo J.P. A novel statistical method for classifying habitat generalists and specialists. Ecology. 2011. 92:1332-1343.
10. Butler, R., Montagnini, F. and Arroyo-Mora P. Woody Understory Plant Diversity in Pure and Mixed Native Tree Plantations at La Selva Biological Station, Costa Rica. Forest Ecology and Management. 2008. 255: 2251-2263.
11. Palomaki, M. B., Chazdon R. L., Arroyo-Mora J. P., and Letcher S. G. Juvenile tree growth in relation to light availability in second-growth tropical forests. Journal of Tropical Ecology. 2006. 22 (2): 223-226.
12. Arroyo-Mora, J. P. Sánchez-Azofeifa G. A., Rivard B., Calvo J. C. and Janzen D.H. Dynamics in landscape structure and composition for the Chorotega region, Costa Rica from 1960 to 2000. Agriculture, Ecosystems & Environment. 2005.106: 27–39.
13. Arroyo-Mora J.P. Sánchez-Azofeifa G.A., Kalácska M., Rivard B. and Janzen D.H. Secondary forest detection in a Neotropical dry forest using Landsat 7 ETM+ imagery. Biotropica. 2005. 37(4): 497-507.
14. Kalacska M., Sanchez-Azofeifa G.A., Rivard B., Calvo-Alvarado J.C., Journet A.R.P., Arroyo-Mora J.P., Ortiz-Ortiz D. 2004. Leaf area index measurements in a tropical moist forest: A case study from Costa Rica. Remote Sensing of Environment. 2004. 91: 134-152.
15. Haggar, J. P., Rheingans, R., Arroyo-Mora J. P., Alvarado B. Benefits and costs of intercropping reforestation in the Atlantic lowlands of Costa Rica. New Forests. 2003. 25(1): 41-48
BOOK CHAPTERS, PEER REVIEWED
16. Chazdon, R. L. and J. P. Arroyo. Tropical forests as complex adaptive systems. In Managing forests as complex adaptive systems: Building resilience to the challenge of global change. Editors: Messier, C., K J. Puettmann, and K. D. Coates. Routledge, NY. 2013. Pp. 35-59.
17. Sanchez-Azofeifa G.A., Kalacska M.E., Quesada M., Stoner K.E., Lobo J.A., Arroyo-Mora, P. Tropical Dry Climates. In Phenology: An Integrative Environmental Science. Editor: Schwartz M.D. Springer Science + Business Media B.V. 2nd edition. 2013. Pp. 157-171.
18. Arroyo-Mora J.P., Kalacska M., Caraballo B., Trujillo J., Vargas O. Spectral expression of gender: a pilot study with two dioecious Neotropical tree species. In Hyperspectral remote sensing of tropical and subtropical forests. Editors: Kalacska M., and Sanchez-Azofeifa G.A. Taylor Francis Group-CRC Press, Boca Raton FL. 2008. Pp. 125-140.
19. Arroyo, J. P., M. Kalacska, R. L. Chazdon, D. Civco, G. Obando, and A. A. Sanchum. Assessing recovery following selective logging of lowland tropical forests based on Hyperspectral imagery. In: Hyperspectral remote sensing of tropical and sub-tropical forests. Kalacska M., and Sanchez- Azofeifa G.A. Editors) Taylor and Francis Group - CRC Press, Boca Raton, FL. 2008. Pp.193-212.